Hi Mark,
I have just sent you my processing job for your both imagery thermal and visual which I believe that is entirely satisfactory. If it is okay for you, please share it here (at least some screenshots).
@channel:
We currently have difficulties in extracting the r-jpeg imagery from FLIR cameras. We have contracted FLIR from our side to see what causes this issue. We believe that the latest changes of FLIR SDK do not align with our algorithms.
As soon I will have news from my side I will comment here.