@Matthew, thank you for sharing additional information.
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My understanding is that your drone hovers for approximately 60 seconds above the home point at the mission’s height regardless of whether you enter a custom camera or select the drone’s stock camera in Pix4Dcapture’s app settings. Is my understanding correct?
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You can find more detailed information about your comments regarding reduced amounts of image overlap that are reported by Pix4Dcapture at [iOS] Pix4Dcapture and Parrot Sequoia captures less overlap with custom camera settings.